@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/151/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/150/fypo.obo @ File Written at 2013.11.11 at 08:43:52 PST @ Number of classes changed: 35 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#FYPO_0002475 label: increased protein localization to double-strand break site + SubClassOf('increased protein localization to double-strand break site' PATO_0002051) - SubClassOf('increased protein localization to double-strand break site' 'increased protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002835 label: centromeric outer repeat transcript-derived siRNA absent - SubClassOf('centromeric outer repeat transcript-derived siRNA absent' 'centromeric outer repeat transcripts absent') --- Class Changed: http://www.geneontology.org/go#GO_1902481 label: gamma-tubulin complex assembly - SubClassOf('gamma-tubulin complex assembly' 'protein complex assembly') --- Class Changed: http://www.geneontology.org/go#FYPO_0000273 label: centromeric outer repeat transcripts absent - SubClassOf('centromeric outer repeat transcripts absent' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('centromeric outer repeat transcripts absent' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('centromeric outer repeat transcripts absent' ObjectSomeValueFrom('towards' SO_0001905)) - EquivalentClasses('centromeric outer repeat transcripts absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' SO_0001905)) ) - SubClassOf('centromeric outer repeat transcripts absent' 'substance absent from cell during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002834 label: decreased chromatin silencing at centromere - SubClassOf('decreased chromatin silencing at centromere' ObjectSomeValueFrom('inheres_in' 'chromatin silencing at centromere')) - SubClassOf('decreased chromatin silencing at centromere' 'decreased chromatin silencing') - SubClassOf('decreased chromatin silencing at centromere' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased chromatin silencing at centromere' 'abnormal chromatin silencing at centromere') - EquivalentClasses('decreased chromatin silencing at centromere' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'chromatin silencing at centromere')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0001268 label: abnormal protein localization to kinetochore + SubClassOf('abnormal protein localization to kinetochore' 'abnormal protein localization during vegetative growth') - SubClassOf('abnormal protein localization to kinetochore' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0000451 label: increased protein localization to centromere + SubClassOf('increased protein localization to centromere' PATO_0002051) - SubClassOf('increased protein localization to centromere' 'increased protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#GO_0005654 label: nucleoplasm - SubClassOf('nucleoplasm' 'nuclear part') - SubClassOf('nucleoplasm' ObjectSomeValueFrom('part_of' 'nuclear lumen')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002385 label: decreased protein localization to heterochromatin + SubClassOf('decreased protein localization to heterochromatin' PATO_0002052) - SubClassOf('decreased protein localization to heterochromatin' 'decreased protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#GO_1990074 label: polyuridylation-dependent mRNA catabolic process - SubClassOf('polyuridylation-dependent mRNA catabolic process' 'modification-dependent macromolecule catabolic process') - SubClassOf('polyuridylation-dependent mRNA catabolic process' 'mRNA catabolic process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002386 label: decreased protein localization to heterochromatin at centromere outer repeat - SubClassOf('decreased protein localization to heterochromatin at centromere outer repeat' 'decreased protein localization to centromere outer repeat') --- Class Changed: http://www.geneontology.org/go#FYPO_0002840 label: increased protein localization to chromosome - EquivalentClasses('increased protein localization to chromosome' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) ) - SubClassOf('increased protein localization to chromosome' ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) - SubClassOf('increased protein localization to chromosome' PATO_0002051) - SubClassOf('increased protein localization to chromosome' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('increased protein localization to chromosome' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002846 label: inviable mixed population including spores, germinated spores and small cells - SubClassOf('inviable mixed population including spores, germinated spores and small cells' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable cell')) - SubClassOf('inviable mixed population including spores, germinated spores and small cells' ObjectSomeValueFrom('includes cells with phenotype' 'inviable after spore germination, multiple cell divisions, spheroid cell')) - SubClassOf('inviable mixed population including spores, germinated spores and small cells' 'inviable mixed population including spores, germinated spores and cells with abnormal morphology') - SubClassOf('inviable mixed population including spores, germinated spores and small cells' ObjectSomeValueFrom('includes cells with phenotype' 'abolished spore germination')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002473 label: abnormal protein localization to double-strand break site + SubClassOf('abnormal protein localization to double-strand break site' 'abnormal protein localization during vegetative growth') - SubClassOf('abnormal protein localization to double-strand break site' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002839 label: decreased protein localization to chromosome - SubClassOf('decreased protein localization to chromosome' PATO_0002052) - EquivalentClasses('decreased protein localization to chromosome' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) ) - SubClassOf('decreased protein localization to chromosome' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased protein localization to chromosome' ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) - SubClassOf('decreased protein localization to chromosome' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0000450 label: decreased protein localization to centromere + SubClassOf('decreased protein localization to centromere' PATO_0002052) - SubClassOf('decreased protein localization to centromere' 'decreased protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0001269 label: abolished protein localization to kinetochore + SubClassOf('abolished protein localization to kinetochore' 'protein localization abolished during vegetative growth') - SubClassOf('abolished protein localization to kinetochore' 'abolished protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0001508 label: abolished protein localization to chromatin during vegetative growth + SubClassOf('abolished protein localization to chromatin during vegetative growth' 'protein localization abolished during vegetative growth') - SubClassOf('abolished protein localization to chromatin during vegetative growth' 'abolished protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002837 label: normal centromeric outer repeat transcript-derived siRNA level - SubClassOf('normal centromeric outer repeat transcript-derived siRNA level' 'normal centromeric outer repeat transcript level') --- Class Changed: http://www.geneontology.org/go#FYPO_0002252 label: inviable swollen elongated mononucleate vegetative cell with normally localized septum + SubClassOf('inviable swollen elongated mononucleate vegetative cell with normally localized septum' 'inviable septated vegetative cell with abnormal cell morphology') + SubClassOf('inviable swollen elongated mononucleate vegetative cell with normally localized septum' 'inviable swollen elongated vegetative cell') - SubClassOf('inviable swollen elongated mononucleate vegetative cell with normally localized septum' 'inviable swollen elongated septated cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0000012 label: mitotic G2/M transition delay - SubClassOf('mitotic G2/M transition delay' ObjectSomeValueFrom('has_output' 'viable elongated vegetative cell')) --- Class Changed: http://www.geneontology.org/go#GO_1902480 label: protein localization to mitotic spindle - SubClassOf('protein localization to mitotic spindle' 'protein localization to organelle') --- Class Changed: http://www.geneontology.org/go#FYPO_0002844 label: inviable microcolony, swollen elongated septated cells - SubClassOf('inviable microcolony, swollen elongated septated cells' 'inviable microcolony, swollen cells, abnormal cell shape') - SubClassOf('inviable microcolony, swollen elongated septated cells' 'inviable microcolony, septated cells with abnormal morphology') - SubClassOf('inviable microcolony, swollen elongated septated cells' 'inviable microcolony, elongated cells') - SubClassOf('inviable microcolony, swollen elongated septated cells' ObjectSomeValueFrom('comprises cells with phenotype' 'inviable swollen elongated septated cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0001994 label: inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end + SubClassOf('inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end' 'inviable swollen elongated vegetative cell') - SubClassOf('inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end' 'inviable swollen elongated septated cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0000449 label: abnormal protein localization to centromere + SubClassOf('abnormal protein localization to centromere' 'abnormal protein localization during vegetative growth') - SubClassOf('abnormal protein localization to centromere' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002843 label: protein mislocalized to nucleoplasm - SubClassOf('protein mislocalized to nucleoplasm' ObjectSomeValueFrom('output_of' 'abnormal protein localization to nucleus')) - SubClassOf('protein mislocalized to nucleoplasm' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('protein mislocalized to nucleoplasm' ObjectIntersectionOf(PATO_0000628 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein') ObjectSomeValueFrom('towards' 'nucleoplasm')) ) - SubClassOf('protein mislocalized to nucleoplasm' ObjectSomeValueFrom('inheres_in' 'protein')) - SubClassOf('protein mislocalized to nucleoplasm' ObjectSomeValueFrom('towards' 'nucleoplasm')) - SubClassOf('protein mislocalized to nucleoplasm' 'mislocalized protein during vegetative growth') --- Class Changed: http://www.geneontology.org/go#GO_0036450 label: polyuridylation-dependent decapping of nuclear-transcribed mRNA - SubClassOf('polyuridylation-dependent decapping of nuclear-transcribed mRNA' 'deadenylation-independent decapping of nuclear-transcribed mRNA') - SubClassOf('polyuridylation-dependent decapping of nuclear-transcribed mRNA' ObjectSomeValueFrom('part_of' 'polyuridylation-dependent mRNA catabolic process')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002838 label: abnormal protein localization to chromosome - SubClassOf('abnormal protein localization to chromosome' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('abnormal protein localization to chromosome' ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) - SubClassOf('abnormal protein localization to chromosome' 'abnormal protein localization during vegetative growth') - EquivalentClasses('abnormal protein localization to chromosome' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal protein localization to chromosome' ObjectSomeValueFrom('qualifier' PATO_0000460)) --- Class Changed: http://www.geneontology.org/go#FYPO_0002842 label: decreased protein localization to centromere outer repeat - SubClassOf('decreased protein localization to centromere outer repeat' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased protein localization to centromere outer repeat' ObjectSomeValueFrom('occurs_at' SO_0001799)) - EquivalentClasses('decreased protein localization to centromere outer repeat' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome') ObjectSomeValueFrom('occurs_at' SO_0001799)) ) - SubClassOf('decreased protein localization to centromere outer repeat' 'decreased protein localization to centromere') - SubClassOf('decreased protein localization to centromere outer repeat' ObjectSomeValueFrom('inheres_in' 'protein localization to chromosome')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002841 label: abolished protein localization to chromosome - SubClassOf('abolished protein localization to chromosome' ObjectSomeValueFrom('towards' 'protein localization to chromosome')) - EquivalentClasses('abolished protein localization to chromosome' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'protein localization to chromosome')) ) - SubClassOf('abolished protein localization to chromosome' 'abnormal protein localization to chromosome') - SubClassOf('abolished protein localization to chromosome' 'protein localization abolished during vegetative growth') - SubClassOf('abolished protein localization to chromosome' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002845 label: inviable swollen elongated septated cell - SubClassOf('inviable swollen elongated septated cell' ObjectSomeValueFrom('has_part' 'septated cell')) - SubClassOf('inviable swollen elongated septated cell' ObjectSomeValueFrom('has_part' 'inviable vegetative cell')) - SubClassOf('inviable swollen elongated septated cell' 'septated cell') - EquivalentClasses('inviable swollen elongated septated cell' ObjectIntersectionOf('cell phenotype' ObjectSomeValueFrom('has_part' 'elongated cell') ObjectSomeValueFrom('has_part' 'swollen cell') ObjectSomeValueFrom('has_part' 'inviable vegetative cell') ObjectSomeValueFrom('has_part' 'septated cell')) ) - SubClassOf('inviable swollen elongated septated cell' 'inviable swollen elongated vegetative cell') - SubClassOf('inviable swollen elongated septated cell' ObjectSomeValueFrom('has_part' 'elongated cell')) - SubClassOf('inviable swollen elongated septated cell' 'inviable septated vegetative cell with abnormal cell morphology') - SubClassOf('inviable swollen elongated septated cell' ObjectSomeValueFrom('has_part' 'swollen cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002836 label: increased centromeric outer repeat transcript-derived siRNA level - SubClassOf('increased centromeric outer repeat transcript-derived siRNA level' 'increased centromeric outer repeat transcript level') --- Class Changed: http://www.geneontology.org/go#FYPO_0000452 label: abnormal protein localization to chromatin during vegetative growth + SubClassOf('abnormal protein localization to chromatin during vegetative growth' 'abnormal protein localization during vegetative growth') - SubClassOf('abnormal protein localization to chromatin during vegetative growth' 'abnormal protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0002474 label: decreased protein localization to double-strand break site + SubClassOf('decreased protein localization to double-strand break site' PATO_0002052) - SubClassOf('decreased protein localization to double-strand break site' 'decreased protein localization to chromosome') --- Class Changed: http://www.geneontology.org/go#FYPO_0000634 label: protein localization to centromere abolished + SubClassOf('protein localization to centromere abolished' 'protein localization abolished during vegetative growth') - SubClassOf('protein localization to centromere abolished' 'abolished protein localization to chromosome') @New Classes